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  • STAMP data Exploration and Differential Expression
  • Contents
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STAMP data Exploration and Differential Expression#

Process & analyse STAMP data with ease! STAMPede is built to handle huge datasets with shallow depth, using syntax familiar to scanpy users.

Contents#

  • Installation
    • Pip/Conda
    • Developer installation
  • API reference
    • stampede
    • stampede.pp
    • stampede.pl
    • stampede.tl
    • Configuration
  • Tutorial
    • 00 - Setup
    • 01 - Read
    • 02 - QC
    • 03 - Filtering
    • 04 - Binarize
    • 05 - Dimensionality reduction
    • 06 - Clustering
    • 07 - Differential expression analysis
  • Citation

© Copyright 2026, Niels Velthuijs & Siebren Frölich.

Last updated on 2026-04-29, 12:07 (UTC).