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STAMPede

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  • Installation
  • API reference
  • Tutorial
  • Citation
  • GitHub

Index

A | B | C | D | F | G | K | M | N | P | R | S | V

A

  • avg_per_pixel() (in module stampede.pl)

B

  • binarize() (in module stampede.pp)

C

  • cell_qc_postfilter() (in module stampede.pp)
  • column_distribution() (in module stampede.pl)
  • config (in module stampede)
  • correlations() (in module stampede.pl)

D

  • detection_rates() (in module stampede.pp)
  • dim_red() (in module stampede.pl)
    • (in module stampede.pp)

F

  • filter_cells() (in module stampede.pp)
  • filter_genes() (in module stampede.pp)

G

  • gene_qc() (in module stampede.pp)
  • gene_qc_postfilter() (in module stampede.pp)

K

  • knn_count_smoothing() (in module stampede.pp)

M

  • module
    • stampede
    • stampede.pl
    • stampede.pp
    • stampede.tl

N

  • ncell_per_condition() (in module stampede.pl)

P

  • paired_binomial_glm() (in module stampede.tl)
  • paired_binomial_glm_volcano() (in module stampede.pl)
  • pseudobulk() (in module stampede.pp)
  • pydeseq2() (in module stampede.tl)
  • pydeseq2_volcano() (in module stampede.pl)

R

  • read_cosmx() (in module stampede)

S

  • scree() (in module stampede.pl)
  • sketch() (in module stampede.pl)
    • (in module stampede.tl)
  • slide_qc() (in module stampede.pl)
    • (in module stampede.pp)
  • stampede
    • module
  • stampede.pl
    • module
  • stampede.pp
    • module
  • stampede.tl
    • module

V

  • validate_input() (in module stampede)
  • value_distribution() (in module stampede.pl)
  • violin() (in module stampede.pl)

© Copyright 2026, Niels Velthuijs & Siebren Frölich.

Last updated on 2026-04-29, 12:07 (UTC).